PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g23550.2
Common NameLOC4335417, Os04g0301500, OSNPB_040301500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 190aa    MW: 20269.2 Da    PI: 5.9395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g23550.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000122183955
                      TCHHHHHHHHHHHHHHH CS
               HLH 39 sKaeiLekAveYIksLq 55
                      +Ka+i + A+eYI+ Lq
  LOC_Os04g23550.2  2 DKASIIKDAIEYIQRLQ 18
                      8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-5133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-7134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.66E-5110170No hitNo description
CDDcd048730.00251111177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDKASIIKDA IEYIQRLQAE EQQMLREVAA LESAAAASAA PAAANPFAGL GADEEHEYGH  60
HHPSSSSERT KKVKRALSVS SISDALLAAA APAPPVEIQE LRVSEVGDRV LVVSVTCSKR  120
RDAMARVCRA LEELRLRVIT ANITSVAGCL MHTLFVEVDH MDSVQMKQMV EAALSQLVAT  180
GSPLSSMSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.60430.0callus| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO294666340.0
Expression AtlasQ0JEB7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g23550.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g23550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.11e-133transcription factor bHLH35
TrEMBLA0A0E0P7131e-131A0A0E0P713_ORYRU; Uncharacterized protein
TrEMBLQ0JEB71e-131Q0JEB7_ORYSJ; Os04g0301500 protein
STRINGORUFI04G07860.11e-132(Oryza rufipogon)
STRINGOS04T0301500-011e-132(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-28bHLH family protein