PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g27990.1
Common NameOs04g0347400, Os04g0347500, OsJ_14357, OSJNBa0020I02.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 128aa    MW: 12860.6 Da    PI: 6.5073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g27990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.9e-1421123399
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                       kvl+ps+ +k   ++++ + a++            gg +++    ++ ++ g++W+v++    ++ +g+ +l++GW eF+ a+gL  g fvv 
  LOC_Os04g27990.1  21 KVLMPSSFHK---MRISDELAADLlgergdgggggGGAPRR--AARVVSPVGKVWDVEVGRddDGDGGGAFLGRGWAEFAAAHGLGMGWFVVV 108
                       5666666555...5688888877788888888876555544..69999***********6655666666************************ PP

                       EE-SSSEE..EEEEE-S CS
                B3  83 kldgrsefelvvkvfrk 99 
                       +++g  ++ l+vk+f++
  LOC_Os04g27990.1 109 RHEG--GGVLTVKLFDT 123
                       *755..7778***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1418126IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-619124IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-1520126IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-1121123IPR003340B3 DNA binding domain
CDDcd100175.71E-921122No hitNo description
PROSITE profilePS508639.99667124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA  60
RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL  120
FDTTCCL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XS74
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g27990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g27990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-162AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-162AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880727.15e-58LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS742e-83Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLB8ASH15e-81B8ASH1_ORYSI; Uncharacterized protein
STRINGORUFI04G09430.19e-82(Oryza rufipogon)
STRINGONIVA04G06710.19e-82(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Representative plantOGRP10106410