PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g31804.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27939.6 Da    PI: 7.224
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g31804.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405.2e-131153244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      rie+  +r + f kR++g+ KK eEL vLCda v  +++s +g
  LOC_Os04g31804.1 11 RIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
                      8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-11264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.941253IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-16480IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-11424IPR002100Transcription factor, MADS-box
PfamPF003193.4E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKVEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATIENI VERYEHSQAA QKGVHGRCIL QKRKSKDFQV LKETIDKGPI NDDMRPIDEK  120
DISTLNMDQI SQIEILLEDE LRWTRARKVV ADRIARLQKK VQKKPATAET ESNSTEMPSD  180
HEKKQVAGGS QQSAEEEEEE MEVVLRHRLS LGTGDRDDGG GGAAEQRHRT TPPPAVDLNV  240
PCRDAGQLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.590510.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g31804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g31804
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-109AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.10.0truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLI1PKM91e-157I1PKM9_ORYGL; Uncharacterized protein
STRINGORGLA04G0074800.11e-158(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1509655
Representative plantOGRP1621322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-19AGAMOUS-like 79