PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g34970.1
Common NameOs04g0429050, OSJNBa0042L16.9, OSNPB_040429050
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 245aa    MW: 24655 Da    PI: 7.6742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g34970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-2062111255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  LOC_Os04g34970.1  62 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 111
                       8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3261120IPR001471AP2/ERF domain
PROSITE profilePS5103225.6262119IPR001471AP2/ERF domain
CDDcd000185.74E-1862119No hitNo description
PfamPF008471.2E-1362111IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2262120IPR016177DNA-binding domain
SMARTSM003803.8E-3562125IPR001471AP2/ERF domain
PRINTSPR003671.3E-116374IPR001471AP2/ERF domain
PRINTSPR003671.3E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MALSEPDLAA ETEAIVSALT HVVAYGGGGP PPSEETAASA VTRTAPWRAD GARQGAVPAA  60
RKYRGVRRRP WGKWAAEIRD PHRAARVWLG TFATAEDAAR AYDAAALRFR GGRARLNFPE  120
DAAAADERRA TDAAAAAAAA SSAPAALLES QPGDVADCLD YSRILAGAPE RPTSSTVPDG  180
FFGGGGNGRF LHSWSIGTSP SPSGSGSGGA GGGGGGGGGG APVRPLFHGG NGWEQRGDSA  240
YNGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2161119463ATERF1
3gcc_A1e-2161119463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XUT6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g34970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g34970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066320.0AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.11e-168dehydration-responsive element-binding protein 1C-like
TrEMBLQ7XUT61e-167Q7XUT6_ORYSJ; OSJNBa0042L16.9 protein
STRINGOS04T0429050-001e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-16related to AP2 6