PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g37440.1
Common NameOs04g0447232, OSNPB_040447232
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 153aa    MW: 16672.2 Da    PI: 9.7059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g37440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS46.75.3e-15266259323
              GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                       + l+yy a fd++ +a+l ++  +r+kvE++ ++rei+n+va egaer+erhe+++  r+r+e+ G
  LOC_Os04g37440.1   2 HYLRYYDAAFDAVdAAGLLETRPARAKVEEM-FAREIRNAVAFEGAERFERHESFAGRRRRMEDGG 66 
                       679**********9999**************.******************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.8E-12266IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MHYLRYYDAA FDAVDAAGLL ETRPARAKVE EMFAREIRNA VAFEGAERFE RHESFAGRRR  60
RMEDGGGLQW GSKAEEKCLL PSSSLARRPR RQPSPPVSLR PDGSLPPAVA AAPLVLPLPR  120
ASAAEPPRCA PMPPTAAPLV LPPPLPTEKE RI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14760RFERHESFAGRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891104e-69callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661354e-69
Expression AtlasA0A0P0WB67-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g37440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g37440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064480.0AL606448.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551790.0CR855179.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152K17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P9S71e-101A0A0E0P9S7_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WB671e-101A0A0P0WB67_ORYSJ; Os04g0447232 protein
STRINGORUFI04G15420.11e-102(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2600155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.15e-06GRAS family protein