PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g38400.1
Common NameOSJNBa0036B21.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family EIL
Protein Properties Length: 446aa    MW: 48324.8 Da    PI: 4.8073
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g38400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33567.1e-109403342299
                       XXXXXXXXXXXXXXXXXXXXXX..XXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.......tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 
                       +lkkrmwkdqmll++l++r+ ++ + + ++        +a++++ ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e+g pv+g+
  LOC_Os04g38400.1  40 DLKKRMWKDQMLLMKLEGRSGHEGALAAQDhrvvrreEEAAEEEPPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDESGVPVSGS 132
                       8*******************9987666665667777666777779************************************************ PP

                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
              EIN3  88 sdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                       sdsLr+WWk++v+fdr+gp+a+s +        g+ ++ +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG e+w
  LOC_Os04g38400.1 133 SDSLRGWWKDDVAFDRAGPTALSGRG-----GRGSPRSPAAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEAW 220
                       ************************94.....344455567899************************************************** PP

                       HHHHT.--TT--.-----GGG--HHHHHHHHH..HHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXX CS
              EIN3 181 wgelg.lskdqgtppykkphdlkkawkvsvLt..avikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkq 270
                       wg +g ++++qg+ppy+kphdlkkawk+s+L+  avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++   +       
  LOC_Os04g38400.1 221 WGLQGeAQASQGPPPYRKPHDLKKAWKISLLRasAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALRS------- 306
                       *******************************83359*****************************************976543322....... PP

                       XXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
              EIN3 271 spkvtlsceqkedvegkkeskikhvqavk 299
                          + l+++++e +eg   ++ +h+ ++k
  LOC_Os04g38400.1 307 LHITPLDDDDDEPNEGPTPRE-SHADKRK 334
                       222333333333333333333.4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.6E-11540297No hitNo description
Gene3DG3DSA:1.10.3180.109.7E-62168304IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.02E-54173300IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDDKGKAKAA DAAAAAEAAP EQEEFFSDSE SGSESIEIAD LKKRMWKDQM LLMKLEGRSG  60
HEGALAAQDH RVVRREEEAA EEEPPEARYR RKAMLRAQDG VLRHMLKMME ACNARGFVYG  120
IVDESGVPVS GSSDSLRGWW KDDVAFDRAG PTALSGRGGR GSPRSPAAAA SFLHGLLDIQ  180
DSTLGSLLSA LIQHCEPPQR SFPLDRGLPP PWWPTGGEAW WGLQGEAQAS QGPPPYRKPH  240
DLKKAWKISL LRASAVIKHL SPRFDQIRKL VWQSKRLQHK MSARDADTWS RVITQEEALS  300
RHALRSLHIT PLDDDDDEPN EGPTPRESHA DKRKREVGGG GGGGGEEMQL SLPADIDVVP  360
EADRSSIDEL MKLYYSCLQG TDTDGGGGEQ GKDVAAGAGG DGSVAPETVH VDDDDMLEGL  420
LGVAQVVDMS DFPDSPICHW GSSSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-471743014128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-471743014128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XV12
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g38400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g38400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066360.0AL606636.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ55e-89EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLQ7XV120.0Q7XV12_ORYSJ; OSJNBa0036B21.5 protein
STRINGOMERI04G12190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-84EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]