PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g40140.1
Common NameOs04g0477300, OSNPB_040477300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 209aa    MW: 23131.6 Da    PI: 4.1484
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g40140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.25.4e-0984690128
               NAM  90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       +++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  LOC_Os04g40140.1   8 QQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 46 
                       67888.9999**********996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.519165IPR003441NAC domain
SuperFamilySSF1019412.88E-11865IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAQNWKIQQI YHNGVLKGWK KILVLYKGSK KNKIVQANWV MHQYNLGVEE GGEDGELVVS  60
KVFYQLSSKQ TGTPEMDSVT EEASDALTIR SDPITPITNP PLPRCLMNSP CDTEQNGTIS  120
HDQEGECSTS TLRPMVEAGN RAGCSAGAST AGDFNEDLLQ RCEFPEDPVP TLDDTLPFLY  180
TDETDLFSWE DFQFGSQESF GWVDGDHT*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329932910.0
Expression AtlasB7F0X7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g40140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g40140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303310.0AB630331.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Nipponbare.
GenBankAK1080820.0AK108082.1 Oryza sativa Japonica Group cDNA clone:002-138-G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.12e-75PREDICTED: NAC domain-containing protein 8-like
TrEMBLB7F0X71e-155B7F0X7_ORYSJ; Os04g0477300 protein
TrEMBLQ01JY21e-155Q01JY2_ORYSA; OSIGBa0116M22.6 protein
STRINGOS04T0477300-011e-156(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-12NAC family protein