PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g42940.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 396aa    MW: 43979.4 Da    PI: 8.1485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g42940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.62e-09661824126
               NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       G  F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++  + g  ++ra   g  + + + k   +
  LOC_Os04g42940.1  66 GQPFDPTAEDIVNRYLPLRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRQC-PGG--RRRA-GPGDYRLSQEAK---H 151
                       667************977766666556567**************83333344457******99775.433..2333.445555444322...2 PP

               NAM  95 kkgelvglkktLvfykgrapkg..ektdWvmhey 126
                          +     +++ +y+ ++  g  ++t+W m ey
  LOC_Os04g42940.1 152 ---RGNAFCHSFRYYEYEDAGGgfRETEWRMVEY 182
                       ...2235667888886655544235899999888 PP
2NAM24.95.7e-0823736013128
               NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk......rknratksgyWkatgkdkevlskkg 97 
                        lv+ yL+    g++l + +v +  d+++++P  + +++ a +++ ew+f + r + +a+g+      r+++ +  g      + + v   ++
  LOC_Os04g42940.1 237 VLVQLYLASLRLGNPLAC-RVHRADDVFDAHPAVITAALPAaNDRcEWFFAAVRPRGHAQGHgdgappRPRK-AGPGAYVPVRECRVVDG-RR 326
                       58999****999999998.666667*********98533331444699999999999998777777645544.57799998888776666.88 PP

               NAM  98 elvglkktLvfy...kgrapkgektdWvmheyrl 128
                        ++g++ ++ +    ++ ++ +++t+W m+eyr+
  LOC_Os04g42940.1 327 GDMGCRLVFWYReddEEARRASRRTEWWMDEYRF 360
                       89***9999888554344555679********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-2356205IPR003441NAC domain
PROSITE profilePS5100516.03263207IPR003441NAC domain
PfamPF023653.7E-767182IPR003441NAC domain
PROSITE profilePS5100513.457225389IPR003441NAC domain
SuperFamilySSF1019416.8E-22236387IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLPMRPRASQ AAAPETAAAA ESLREEETED GWVFLAGRSR ATRPPPPPPS PMARAVASGS  60
SGGGGGQPFD PTAEDIVNRY LPLRRALRCD ALPRQVHDAD VYGAHPALLA SVYPAANERF  120
EWFFFVCRRQ CPGGRRRAGP GDYRLSQEAK HRGNAFCHSF RYYEYEDAGG GFRETEWRMV  180
EYGDRGRDAG AGGSEGFELV VCKVYPARGG ALHERLGADR AVLATRHRAD EDAKPQVLVQ  240
LYLASLRLGN PLACRVHRAD DVFDAHPAVI TAALPAANDR CEWFFAAVRP RGHAQGHGDG  300
APPRPRKAGP GAYVPVRECR VVDGRRGDMG CRLVFWYRED DEEARRASRR TEWWMDEYRF  360
GPDFPYGELP APMARGEDEE LVVYKVYPRL VGNRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.986550.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g42940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g42940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629690.0AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552130.0CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634867.10.0uncharacterized protein LOC9267434
TrEMBLB8ARN60.0B8ARN6_ORYSI; Uncharacterized protein
STRINGORUFI04G19680.10.0(Oryza rufipogon)
STRINGORGLA04G0153400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819
Representative plantOGRP1481644