PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g44440.1
Common NameLOC4336452, Os04g0526000, OSJNBa0038O10.11, OSNPB_040526000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 207aa    MW: 21985 Da    PI: 10.9191
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g44440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-3451168489
               TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas.....nss 86 
                       +++  +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c    +      s+s        
  LOC_Os04g44440.1  51 ATQGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapS----TASSSfllgkR-- 137
                       556679********************************************************88888544432221....22222222221.. PP

               TCP  87 sg.............................k 89 
                        +                             +
  LOC_Os04g44440.1 138 -PrqedheaptfwealqqqprpavsswgalvS 168
                       .0333443344444444444443333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3054151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00955109IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAALVD AVLPAPRKAA ATQGGKDRHS  60
KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS  120
CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV  180
AQVHHLNLLS ALSGAATRRP AQEESR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.520970.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166319150.0
Expression AtlasQ7XKJ6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g44440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g44440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630190.0AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.11e-147transcription factor TCP21
TrEMBLQ7XKJ61e-146Q7XKJ6_ORYSJ; OSJNBa0038O10.11 protein
STRINGOS04T0526000-011e-147(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.18e-38TCP family protein