PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g47750.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 153aa    MW: 16635.3 Da    PI: 7.8941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g47750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-0765127146
                       TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 
                       r+ W++e+ ++lv a     ++            Wk +a++ +       +Rt+ qck++w++
  LOC_Os04g47750.1  65 RMHWSKEDNLRLVSAWLNNSNDpingnskkgphYWKQVAEEYNtyapkgRKRTAMQCKNHWNS 127
                       688**********************************************99**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.3E-965129No hitNo description
PROSITE profilePS500906.96965129IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.1E-765128IPR009057Homeodomain-like
SuperFamilySSF466898.13E-665148IPR009057Homeodomain-like
CDDcd001674.17E-468128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MATGPSSPVG SAALFGVGGG SGSRCEDSAS PVTSPIAHAQ NTSKDPNGIE EWSDVCSDEE  60
NKCVRMHWSK EDNLRLVSAW LNNSNDPING NSKKGPHYWK QVAEEYNTYA PKGRKRTAMQ  120
CKNHWNSIST LVAKFHGCWS ELSKTYQSGR SD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g47750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g47750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066280.0AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316450.12e-36glutathione S-transferase T3-like
TrEMBLA0A1W0W1T12e-69A0A1W0W1T1_SORBI; Uncharacterized protein
STRINGPavir.J27647.1.p4e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610
Representative plantOGRP925722