PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g52770.1
Common NameLOC4337015, Os04g0618600, OsJ_16185, OSJNBa0058K23.6, OSNPB_040618600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 182aa    MW: 21053.9 Da    PI: 9.9689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g52770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.8e-181763455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  LOC_Os04g52770.1 17 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 63
                      59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-201070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-211689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-171667No hitNo description
PfamPF000104.8E-151863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-181968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEARRPTPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK  60
SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI RPSEPRPFQI THATQQRQSN  120
VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL  180
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.45480.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329918980.0
Expression AtlasQ7FA23-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g52770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g52770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-132transcription factor PIF1
RefseqXP_015634980.11e-132transcription factor PIF1
TrEMBLB8AUF91e-131B8AUF9_ORYSI; Uncharacterized protein
TrEMBLI1PPY91e-131I1PPY9_ORYGL; Uncharacterized protein
TrEMBLQ7FA231e-131Q7FA23_ORYSJ; OSJNBa0058K23.6 protein
STRINGOS04T0618600-011e-131(Oryza sativa)
STRINGORGLA04G0225800.11e-131(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-26phytochrome interacting factor 3-like 5