PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03900.1
Common NameOs05g0129800, OSNPB_050129800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 247aa    MW: 27598.2 Da    PI: 7.5567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.5e-113960223
                      --SS-EEEEEEE--TT-SS-EE CS
              WRKY  2 dDgynWrKYGqKevkgsefprs 23
                       D ++WrKYGqK++kgs++pr 
  LOC_Os05g03900.1 39 ADSWSWRKYGQKPIKGSPHPRY 60
                      69******************95 PP
2WRKY46.66.9e-151231641959
                       SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++r+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  LOC_Os05g03900.1 123 AVSRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 164
                       579******9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-303158IPR003657WRKY domain
SuperFamilySSF1182901.09E-83362IPR003657WRKY domain
SMARTSM007741.4E-2338165IPR003657WRKY domain
PROSITE profilePS5081119.24440166IPR003657WRKY domain
PfamPF031062.0E-64060IPR003657WRKY domain
SuperFamilySSF1182906.41E-12122164IPR003657WRKY domain
PfamPF031061.1E-11123164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-30126165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHPRY  60
HHLALIPHTY TAPNVLVISQ SFACALILYI TDNFTRIRLS DQLLVRFFSL YQSIIFALFV  120
DHAVSRGYYK CSSYRGCPAR KQVDKCRNDA SLLIITYTSD HNHDNYAATT TNSVQEQAHN  180
PDTSDPLSNG MSLAEVVTVA SSKLSGEEES CDFFDELEEL PVSASPLPSL SFMVQECSFS  240
DARTLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1029600.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567646770.0
Expression AtlasC7J2F1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417990.0AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence.
GenBankAK2880620.0AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-83probable WRKY transcription factor 69
TrEMBLC7J2F10.0C7J2F1_ORYSJ; Os05g0129800 protein
STRINGOS05T0129800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-15WRKY DNA-binding protein 65