PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g25320.1
Common NameLOC4338396, Os05g0317300, OsJ_18038
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 777aa    MW: 89726.7 Da    PI: 6.1038
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g25320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.1e-2086173188
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       ++Y++YA++ GF +++s+ ++s+ +++  +++f C  e +++e+  +  +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
  LOC_Os05g25320.1  86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173
                       69************************************999998877567888899999***********99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1986173IPR004330FAR1 DNA binding domain
PfamPF105516.1E-28298392IPR018289MULE transposase domain
PROSITE profilePS509669.965579615IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MEDNDDRASA EITTDQENHL KDALIQVFAA TSEHQEGEGE AAEVVQDEEI GEGVEGVRDE  60
EIGDINSKPD KPYVGMEFRD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC  120
HSERSSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL  180
MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI MSVLCDLYGS MQNIPLARKD VSNLRATMRP  240
EAEGTCTDMA ATIKYFQESQ ADDPSFFYSM ELDSESKITS VFWVDGVSRE AYREFGDCVF  300
FNTKYITTKY CLPFAPIIGM NNHGQTVLFG CVLLKAEIEE TFEWVFQTFL KAMDGKVPKS  360
IMTDQDEAME NAIANVLPNT SHRRCSWYIW RNAKFKLGVL PSRLEGFEDD LRHCIDESFN  420
VEEFERRWAA VLDRYNLASN KYMQDLYEIR EKWVPCYFMD CFFPFMSITQ QSEVMEALFK  480
DFVHPGDIIQ NFIVQYEKLV QSCLDRDDKQ LFLTVKTDAN LWSKFPMEEQ ASKFYTRAIF  540
ERFQEHLKNT TMYNVVCEAT PYSYLVQNVF GDQSQNRRYV VHCKLEDETF TCVCKQYERE  600
GLLCEHILKV MTHRNVNLIP DKYLFRRWTL KGSDSAATRS HVPLNMAEAS TRKMRYSTIC  660
KKSVCMASEA CRTQEGYNLA LRSIEELTDK LAAINLTRQD QHLPRPNICD KNGKGITMGE  720
SNTIAEKVLS ESCLKDPTKI RPAAFDNNSE SARKRNKVMK AVQDLRSPFQ VTKLTD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.501900.0callus| flower| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329748640.0
Expression AtlasQ0DJ81-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g25320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g25320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241410.0AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ0DJ810.0Q0DJ81_ORYSJ; Os05g0317300 protein
STRINGORGLA05G0097200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5