PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g34730.1
Common NameLOC107277887, Os05g0420300, OSNPB_050420300, P0426G01.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 198aa    MW: 20067.4 Da    PI: 9.8746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g34730.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-161863251
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                      +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa  
  LOC_Os05g34730.1 18 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 63
                      59****777.**********943...5*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-231890IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-231884IPR001471AP2/ERF domain
PfamPF008478.1E-91861IPR001471AP2/ERF domain
PROSITE profilePS5103219.7961884IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-151866IPR016177DNA-binding domain
PRINTSPR003673.7E-91930IPR001471AP2/ERF domain
PRINTSPR003673.7E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRVAASGGG GGGGEMMRYR GVRRRRWGKW VSEIRVPGTR ERLWLGSYAT AEAAAVAHDA  60
AVCLLRLGGG RRAAAGGGGG LNFPARALAA AAAASSYGGA GGLLSPRSVQ RVASDAGMAA  120
DAQLVDLRRD HPPAAAAASS SGSGVAGDGA RKQGTRGEVS DTYWCRNGED GSRSRSSGSE  180
ELIVYEGLSV DDMEILM*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ60DV7
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g34730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g34730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248360.0AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376230.0AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638993.11e-133ethylene-responsive transcription factor ERF014
SwissprotQ9C9I83e-30ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLQ60DV71e-131Q60DV7_ORYSJ; Os05g0420300 protein
STRINGOS05T0420300-001e-132(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-09ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]