PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37540.1
Common NameOSJNBb0012G21.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 823aa    MW: 94028.2 Da    PI: 8.025
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-17138218190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk          + r+gC a++k++++   + w vtk+++ HnH++ 
  LOC_Os05g37540.1 138 NFYNVYAVSKGFGIRLDKDRMN-TKKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINMSGaGSGWSVTKVVSAHNHPMK 218
                       6****************99998.5555999*********99887655.........9**************99999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-13138218IPR004330FAR1 DNA binding domain
PfamPF105512.1E-33340433IPR018289MULE transposase domain
PROSITE profilePS5096610.299559595IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5559592IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-7570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MDKQVKNHRP SDGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS  60
RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGAGIPMER MVVDNVDSSA VIPPEYADPQ  120
ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT KKQRTMRQIC CSHQGRNPKT  180
KKPSVRIGCP AMMKINMSGA GSGWSVTKVV SAHNHPMKKS VGVTKNYQSH NQIDEGTRGI  240
IEEMVDSSMS LTNMYGMLSG MHGGPSMVPF TRKAMDRVAY AIRRDESSDD MQKTLDVLKD  300
LQKRSKNFFY SIQVDEACRV KNIFWSHAVS RLNFEHFGDV ITFDTTYKTN KYNMPFAPFV  360
GVNNHFQSTF FGCALLREET EESFTWLFNT FKECMNGKVP IGILTDNCPS MAAAIRTVFP  420
NTIHRVCKWH VLKKAKEFMG NIYSKRHTFK KAFHKVLCWD DYYTENSMNG FVKRYDRFFN  480
EKLQKEDSEE FQTSNDKVEI KTRSPIEIHA SQVYTRAVFQ LFSEELIDSL SYMVKPGEDE  540
STVQVVRMNS QESFLRKEYQ VSCDLEREEF SCVCKMFEHK GILCSHILRV LVQYGLSRIP  600
ERYILKRWTK DARDTIPPHL HGYKDDVDAS QSRSYRHVML NRKTVEVAKI ANKDVQTFKM  660
AMTVMNKLLE DMKNQLSLDD GDNSREAPKR AARHKSRSTV LTEDGNEDVG GGDEDSEYDV  720
PSEDEGGNLT ADILPPLKKR SRGRPKVNRY KSGGEVASLK RRKEVGIEKK NTTNECESVE  780
EENQVIDHED EVPFPRRFCH TCHEAGHNSR TCGRTSTYKR KL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Expression AtlasQ688I9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354210.0AC135421.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0012G21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ688I90.0Q688I9_ORYSJ; Uncharacterized protein OSJNBb0012G21.8
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-92FAR1-related sequence 5