PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g38620.1
Common NameOs05g0461200, OSNPB_050461200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 207aa    MW: 21643.5 Da    PI: 10.6554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g38620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00044163123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++F++   L  H  +H
  LOC_Os05g38620.1 41 FECRTCGRRFPTFQALGGHRASH 63
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.88E-73963No hitNo description
PfamPF139121.6E-114065IPR007087Zinc finger, C2H2
SMARTSM003550.194163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5544168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-7115142No hitNo description
PfamPF139126.8E-9119144IPR007087Zinc finger, C2H2
SMARTSM003551.3120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSKRQFGEMD GGIDTARVLM LLSRRRRQHG DVGHARAARV FECRTCGRRF PTFQALGGHR  60
ASHKRPRHGA ERAPRPAGDD DVGAGAGAAL RLVGAASSLS TDEARAGGGG RRTRGAGAAH  120
GCPVCGLEFA VGQALGGHMR RHRAAAGDVA APRVKTDDVV VGDECTGGIC LDLNLTPSEN  180
CDKCRHAQLG VAVNSVQRTI LLDRPL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WND1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g38620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g38620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172650.0AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881071.11e-143zinc finger protein ZAT12
TrEMBLA0A0E0PNK51e-142A0A0E0PNK5_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WND11e-142A0A0P0WND1_ORYSJ; Os05g0461200 protein
STRINGORUFI05G20540.11e-143(Oryza rufipogon)
STRINGOS05T0461200-001e-143(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-23C2H2 family protein