PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g39590.1
Common NameDREB2D, ERF43, LOC4339084, Os05g0473300, OsJ_18893, P0486C01.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 262aa    MW: 27689.2 Da    PI: 4.8025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g39590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1867115355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+Wv+eIr+p   + r kr++lg+fg+a +Aa a+++a+ ++ g
  LOC_Os05g39590.1  67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASILG 115
                       9****998.**********8...3.35**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-2966124IPR001471AP2/ERF domain
PROSITE profilePS5103221.10166123IPR001471AP2/ERF domain
SMARTSM003807.5E-3466129IPR001471AP2/ERF domain
PRINTSPR003673.2E-116778IPR001471AP2/ERF domain
PfamPF008471.4E-1167114IPR001471AP2/ERF domain
CDDcd000182.95E-1867122No hitNo description
SuperFamilySSF541712.81E-2067123IPR016177DNA-binding domain
PRINTSPR003673.2E-11105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA  60
KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILGPRAVL  120
NFPAFSPPAA AIAAPEQCEP PFCSPATTAA ATAPEQRQTP GCSPAAVAGS GGGAVFEERD  180
VKPVVLPLPL PAILQDGGGT EAMAQHWDWE WDASWPELEM FECLDDIAMY LDVDAVMTTR  240
DCKVEELDAD IVDSPLWTLS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1666123563ATERF1
3gcc_A2e-1666123563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.542120.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329950640.0
Expression AtlasQ65WX1-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g39590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g39590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025590.0AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638470.10.0dehydration-responsive element-binding protein 2D
RefseqXP_015638471.10.0dehydration-responsive element-binding protein 2D
SwissprotQ65WX10.0DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA2Y5N60.0A2Y5N6_ORYSI; Uncharacterized protein
STRINGOS05T0473300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-15DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]