PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g41780.1
Common NameLOC4339209, OJ1118_C04.10, Os05g0497300, OSNPB_050497300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 237aa    MW: 24113.3 Da    PI: 9.3484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g41780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-203787256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  LOC_Os05g41780.1 37 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 87
                      69*******.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.67E-183695No hitNo description
PfamPF008471.4E-133786IPR001471AP2/ERF domain
PROSITE profilePS5103223.8683794IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-223795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-323794IPR001471AP2/ERF domain
SMARTSM003804.1E-3537100IPR001471AP2/ERF domain
PRINTSPR003674.8E-113849IPR001471AP2/ERF domain
PRINTSPR003674.8E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPRTSDKTM SPAAAATGLA LGVGGVAGAA AVGTGQHFRG VRKRPWGRYA AEIRDPAKKS  60
RVWLGTFDTA EEAARAYDAA AREYRGAKAK TNFPYPNGAP AAGVNSGSSN SSTVESFGSD  120
VQAPMKAMPI PPSLELDLFH RAAAAAAAGA GGMRFPFEGY PVSHPYYFFG QAAAAAAASG  180
CRMLKIAPAP VTVAALAQSD SDSSSIVDLA PSPPAALAKK AIAFDLDLNC PPPMEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2235108370ATERF1
3gcc_A3e-2235108370ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.231030.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75K82
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g41780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g41780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK1117550.0AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8324820.0CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637538.11e-168ethylene-responsive transcription factor 4
TrEMBLA0A0D3G9E01e-167A0A0D3G9E0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A1611e-167A0A0E0A161_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DTI11e-167A0A0E0DTI1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PPG31e-167A0A0E0PPG3_ORYRU; Uncharacterized protein
TrEMBLA2Y6461e-167A2Y646_ORYSI; Uncharacterized protein
TrEMBLI1PWX81e-167I1PWX8_ORYGL; Uncharacterized protein
TrEMBLQ6J8321e-167Q6J832_ORYSA; Ethylene-responsive element binding factor
TrEMBLQ75K821e-167Q75K82_ORYSJ; Os05g0497300 protein
STRINGOGLUM05G22790.11e-167(Oryza glumipatula)
STRINGOMERI05G18600.11e-167(Oryza meridionalis)
STRINGORUFI05G22850.11e-167(Oryza rufipogon)
STRINGOS05T0497300-011e-167(Oryza sativa)
STRINGORGLA05G0187600.11e-167(Oryza glaberrima)
STRINGOBART05G21580.11e-167(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-20erf domain protein 9