PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g45230.1
Common NameOsJ_19286
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 182aa    MW: 18481.3 Da    PI: 4.6311
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g45230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.49.1e-11128148121
                       ---SS-EEEEEEE--TT-SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                       ldDgy+WrKYGqK vk+s+fp
  LOC_Os05g45230.1 128 LDDGYRWRKYGQKAVKNSDFP 148
                       59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-11114148IPR003657WRKY domain
SuperFamilySSF1182901.02E-8120148IPR003657WRKY domain
PROSITE profilePS5081111.841123148IPR003657WRKY domain
SMARTSM007748.1E-4128159IPR003657WRKY domain
PfamPF031061.4E-6129148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDGLEAAAGD QQHGRLLIPQ LPAAYLASSS MAALSPAGDD WAASLILPDG GSAAAGVGED  60
DLGGGVMAAA AAESSCGGSS TVTSSGVTEA AAAAATTTRR GRGNGKKAGG GGRTPRFAFH  120
TRSENDILDD GYRWRKYGQK AVKNSDFPSD DELLLFSDVD NTQTATENLR FIPLGRVYIT  180
G*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329941182e-34
Expression AtlasB9FH25-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g45230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g45230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1084990.0AC108499.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1187_E11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639822.11e-101probable WRKY transcription factor 24
TrEMBLB9FH251e-126B9FH25_ORYSJ; Uncharacterized protein
STRINGOGLUM05G24880.11e-100(Oryza glumipatula)
STRINGORUFI05G24970.11e-100(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.26e-15WRKY DNA-binding protein 43