PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g50350.1
Common NameLOC107277648, Os05g0579700, OsJ_19670, OSNPB_050579700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 112aa    MW: 12359.6 Da    PI: 10.0299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g50350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-082570244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      g WT+   +++ +a + + ++   +W+ Iar+mg  +++ +++ ++
  LOC_Os05g50350.1 25 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGAKSADEVRRHF 70
                      56*****************99*************889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.7E-62376IPR001005SANT/Myb domain
PfamPF002491.2E-52570IPR001005SANT/Myb domain
SuperFamilySSF466896.93E-112582IPR009057Homeodomain-like
CDDcd001674.00E-62770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MASAAGSKQQ QAMMSLPSSR GGGGGGWTQR QNKQFECALA VYDKETPDRW HNIARYMGGA  60
KSADEVRRHF DHLVEDVSRI ESGRVPFPRY SSSSSSRGAD DGNRSRYLKY Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2518111293RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FLS2
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g50350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g50350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364520.0CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.14e-78protein RADIALIS-like 3
SwissprotQ1A1736e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9FLS29e-77B9FLS2_ORYSJ; Os05g0579700 protein
STRINGOS05T0579700-001e-77(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-28RAD-like 6