PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g01620.1
Common NameOs06g0105350, OSNPB_060105350
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 481aa    MW: 51017 Da    PI: 5.7126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g01620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS213.79.7e-661264791374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                       lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ +
  LOC_Os06g01620.1 126 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALAD 208
                       5789*************************976666676655668899999999998665554.........44333.4669999********* PP

              GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                       +sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+
  LOC_Os06g01620.1 209 ASPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGI 300
                       ***********************************************5533.3578889********************************** PP

              GRAS 175 pfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                       pfef++lv + l++ ++   L+  p+Ea+aV+l      +         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++a
  LOC_Os06g01620.1 301 PFEFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLQSCAA 378
                       **********999986515799999**********998887........56789********************966.......5668899** PP

              GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                       l++sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l 
  LOC_Os06g01620.1 379 LLESLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALA 464
                       *****988.5666999*************998888887......678889******************************************* PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       l W++ +LvsvSaWr
  LOC_Os06g01620.1 465 LWWQRSELVSVSAWR 479
                       **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.817100459IPR005202Transcription factor GRAS
PfamPF035143.3E-63126479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSSPSTS LGSCSSKPPE DPPPPIAADD  60
DCDWDAVVDM HMHMLAPAPA PDSSFLRWIM DTGYADADTF PDHPSFDSDL LQLPMPMPSD  120
HPPQPLVDDL LDAARLLDAG DSTSAREILA RLNHRLPSLP SPPGHAHPPL LRAAALLRDA  180
LLPPTALPVS STPLDVPLKL AAHKALADAS PTVQFTTFTS TQAFLDALGS ARRLHLLDFD  240
VGFGAHWPPL MQELAHHWRR AAGPPPNLKV TALVSPGSSH PLELHLTNES LTRFAAELGI  300
PFEFTALVFD PLSSASPPLG LSAAPDEAVA VHLTAGSGAF SPAPAHLRVV KELRPAVVVC  360
VDHGCERGAL NLLQSCAALL ESLDAAGASP DVVSKVEQFV LRPRVERLAV GGGDKLPPPL  420
QSMLASAGFA ALQVSNAAEA QAECLLRRTA SHGFHVEKRQ AALALWWQRS ELVSVSAWRC  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2620347980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.317160.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329920770.0
Expression AtlasA0A0P0WRA8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g01620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g01620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0P0WRA80.0A0A0P0WRA8_ORYSJ; Os06g0105350 protein
STRINGOS06T0105350-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Representative plantOGRP1407444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-64GRAS family protein