PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g06970.1
Common NameCBF4, DREB1D, ERF116, Os06g0165600, OSJNBa0015I14.27, P0680A03.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 254aa    MW: 27668.2 Da    PI: 10.7473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g06970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-154090355
               AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVrw+   grWv+ +r+p   g +  rf++g+ +taee a+ ++aa+++l g
  LOC_Os06g06970.1 40 FRGVRWRGCAGRWVCKVRVP---GsRGDRFWIGTSDTAEETARTHDAAMLALCG 90
                      8******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-1239104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-2239100IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1439100IPR016177DNA-binding domain
PROSITE profilePS5103216.8843998IPR001471AP2/ERF domain
PfamPF008478.6E-113990IPR001471AP2/ERF domain
CDDcd000189.12E-2140100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKNTAASGQ LMTSSAEATP SSPKRPAGRT KFQETRHLVF RGVRWRGCAG RWVCKVRVPG  60
SRGDRFWIGT SDTAEETART HDAAMLALCG ASASLNFADS AWLLHVPRAP VVSGLRPPAA  120
RCATRCLQGH RRVPAPGRGS TATATATSGD AASTAPPSAP VLSAKQCEFI FLSSLDCWML  180
MSKLISSSRA KGSLCLRKNP ISFCMVTNSY TALLLEYIIL QMNSMIVLIH ELSKYQVFLL  240
LTMITHHLFQ WRR*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO125814910.0
Expression AtlasQ6J1A5-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g06970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:15656983}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g06970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAF2433840.0AF243384.1 Oryza sativa CRT/DRE binding factor (CBF) mRNA, complete cds.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY3452350.0AY345235.1 Oryza sativa transcription factor RCBF4 mRNA, complete cds.
GenBankAY5020520.0AY502052.1 Oryza sativa (indica cultivar-group) CRT/DRE binding protein gene, complete cds.
GenBankAY6076910.0AY607691.1 Oryza sativa (japonica cultivar-group) cold-induced CBF/DREB transcription factor mRNA, complete cds.
GenBankAY7858950.0AY785895.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1D (DREB1D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649414.13e-52dehydration-responsive element-binding protein 1J
SwissprotQ6J1A50.0DRE1D_ORYSJ; Dehydration-responsive element-binding protein 1D
SwissprotQ6REU50.0DRE1D_ORYSI; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0E0HLM21e-120A0A0E0HLM2_ORYNI; Uncharacterized protein
STRINGOS06T0165600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1539234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-29C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Choi DW,Rodriguez EM,Close TJ
    Barley Cbf3 gene identification, expression pattern, and map location.
    Plant Physiol., 2002. 129(4): p. 1781-7
    [PMID:12177491]
  2. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  3. Morsy MR,Almutairi AM,Gibbons J,Yun SJ,de Los Reyes BG
    The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature.
    Gene, 2005. 344: p. 171-80
    [PMID:15656983]
  4. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Zhang Y, et al.
    Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis.
    BMB Rep, 2009. 42(8): p. 486-92
    [PMID:19712584]