PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09790.1
Common NameB1172G12.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 210aa    MW: 23022.6 Da    PI: 4.6622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-171464155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ykGVr +  +g+WvAeIr p++   rkr++lg++ t+e+Aa+a +aa  +l+g
  LOC_Os06g09790.1 14 TRYKGVRLRQ-WGKWVAEIRLPNS---RKRIWLGSYYTPEKAARAFDAAFICLRG 64
                      68*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-101464IPR001471AP2/ERF domain
CDDcd000182.98E-251476No hitNo description
SuperFamilySSF541712.94E-181574IPR016177DNA-binding domain
SMARTSM003801.9E-291580IPR001471AP2/ERF domain
PROSITE profilePS5103221.2321574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-251575IPR001471AP2/ERF domain
PRINTSPR003672.0E-81627IPR001471AP2/ERF domain
PRINTSPR003672.0E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQANTTQPAP EKETRYKGVR LRQWGKWVAE IRLPNSRKRI WLGSYYTPEK AARAFDAAFI  60
CLRGGEAIAG LNFTESPPAV VARTTDPREV LAFATSHANL LSLLDAAIAQ EEEAHSFKKE  120
EEAQVEEKTA EESSDVVRAN AAPPPPVQVA GGSFDWSQLP LYSPTTTPAA EHWEEDNVEG  180
DIPVCSEISV ETSSNSRYIG VVFQMHSYG*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69K68
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ69K681e-152Q69K68_ORYSJ; AP2 domain transcription factor-like
STRINGORGLA06G0057400.11e-150(Oryza glaberrima)
STRINGOBART06G06230.11e-148(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-31ERF family protein