PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09810.1
Common NameB1172G12.14, OsJ_20455
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 208aa    MW: 21805.4 Da    PI: 4.6033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-172978255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr +  +g+W+AeIr ps+   + r++lg+++t+e+Aa+a +aa  +l+g
  LOC_Os06g09810.1 29 KYKGVRLRQ-WGKWAAEIRLPSS---CERIWLGSYDTPEKAARAFDAAFICLRG 78
                      8*****998.**********965...7*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-262890IPR001471AP2/ERF domain
PROSITE profilePS5103221.8252988IPR001471AP2/ERF domain
CDDcd000184.05E-242990No hitNo description
SMARTSM003807.9E-292994IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-192989IPR016177DNA-binding domain
PfamPF008471.8E-92978IPR001471AP2/ERF domain
PRINTSPR003674.1E-93041IPR001471AP2/ERF domain
PRINTSPR003674.1E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEPVSFMQKS AAAAADGGSA AQAAAERRKY KGVRLRQWGK WAAEIRLPSS CERIWLGSYD  60
TPEKAARAFD AAFICLRGVQ AIAGLNFPES PPPPTAARTG DLREVYAFAV SHANRPSAEA  120
APADIVVPAQ VATEESDGVV RGNAAPPPVQ VAAGSLDWSQ FMANPPPMYS PTATAGSQAM  180
WPVTAPAAEA DGEDDELATT CRWSFDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-152489973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69K66
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.14e-54ethylene-responsive transcription factor ERF018-like
TrEMBLQ69K661e-146Q69K66_ORYSJ; AP2 domain transcription factor-like
STRINGORGLA06G0057500.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-30ERF family protein