PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g10820.1
Common NameOs06g0210600, OSNPB_060210600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 212aa    MW: 22374.3 Da    PI: 9.5355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g10820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08129169954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P  a      +l+ a++Le+A++Y+k L
  LOC_Os06g10820.1 129 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVKFL 169
                       699*****************966......9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-9123174No hitNo description
Gene3DG3DSA:4.10.280.105.0E-11124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-13125186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5130169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEFDMAMDMM SQEQLMHIIS QLDSALASSP SPSTSPSASP PRQSPAAHVP VPPGLLNTTM  60
VSTSRAQAAP SAPLHPVAAT AAVQSSSRGI MYTTTRQGVI DAAEEEEAAA PRPRRRNARV  120
SSEPQSVAAR LRRERVSQRM RALQRLVPGG ARLDTASMLE EAIRYVKFLK GHVQSLERAA  180
AALHMHGGHA AAAGFAGDAG DAVYSCPSYY A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WUF9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g10820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g10820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.11e-149transcription factor HEC2
TrEMBLA0A0P0WUF91e-148A0A0P0WUF9_ORYSJ; Os06g0210600 protein
TrEMBLQ69TX21e-148Q69TX2_ORYSJ; BHLH protein-like
STRINGORUFI06G07280.17e-99(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.17e-21bHLH family protein