PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g11940.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 224aa    MW: 24191 Da    PI: 4.6858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g11940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-173080155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ykGVr +  +g+WvAeIr p++   r r++lg+++t+e+Aa+a +aa   l+g
  LOC_Os06g11940.1 30 KKYKGVRLRQ-WGKWVAEIRLPNS---RERVWLGSYDTPEKAARAFDAAFVFLRG 80
                      59*****998.**********933...5********************9887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-233094No hitNo description
PROSITE profilePS5103221.3773192IPR001471AP2/ERF domain
SMARTSM003803.3E-273198IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-183193IPR016177DNA-binding domain
PfamPF008472.7E-103175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-263194IPR001471AP2/ERF domain
PRINTSPR003674.2E-93243IPR001471AP2/ERF domain
PRINTSPR003674.2E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAYISTSSTD HSLSCMRMQT KNTAAPAPEK KYKGVRLRQW GKWVAEIRLP NSRERVWLGS  60
YDTPEKAARA FDAAFVFLRG AGAADAAGLN FPDSPLPVVA RTRDLREVYA FAVSHANRPP  120
PVAGETAATA LAAMAALEHN EVRENIAPSS PLSAVQVAAP PAGSFDWSQL MANSPPLYSP  180
IVIGSHAYDD LAVWPTTQPV EEFSEEDNEN EGATSDELWS FDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-131892172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g11940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g11940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055450.0AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-150ethylene-responsive transcription factor ERF018-like
TrEMBLB9FS971e-147B9FS97_ORYSJ; Uncharacterized protein
STRINGOBART06G07840.11e-147(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-29ERF family protein