PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g23030.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 214aa    MW: 21962.6 Da    PI: 6.5753
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g23030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.26.2e-1660110453
       ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 
                       ++Y+eC kNhAaslGgh     +   +  g e +++++l CaACgCH nFH
  LOC_Os06g23030.1  60 TVYQECPKNHAASLGGHGAGRLRGVHAVVGGEpTDPTSLMCAACGCHCNFH 110
                       78****************999999999888888****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-1260110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-860110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.69662113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKLSTFATAA GAAADRSRGG GGKHGVRAAS RVGATGGVVA GDMAELQLRR AQPAVGGGET  60
VYQECPKNHA ASLGGHGAGR LRGVHAVVGG EPTDPTSLMC AACGCHCNFH CWLLEGSPPP  120
PPPLALPAPP MPANVLHGQL HREEETPEVR LPGVDGDESD NNSDGSEYYD ERSVSPPSPP  180
HLPAPVVHQP YYPSAQHMLL SLGSSGQAQR LPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511600.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329712400.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g23030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g23030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0612220.0AK061222.1 Oryza sativa Japonica Group cDNA clone:006-210-F04, full insert sequence.
GenBankAP0054490.0AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.17e-29zinc-finger homeodomain protein 9
SwissprotQ6ER216e-30ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0E0PXD71e-118A0A0E0PXD7_ORYRU; Uncharacterized protein
STRINGORUFI06G14430.11e-119(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2165755
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-10zinc finger homeodomain 1