PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g30810.1
Common NameOJ1288_C01.10, Os06g0504100, OsJ_21477, OSNPB_060504100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 211aa    MW: 22761.4 Da    PI: 4.7949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g30810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.1e-251966249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
  LOC_Os06g30810.1 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66
                      8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-311069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-251080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.7451070IPR002100Transcription factor, MADS-box
CDDcd002652.92E-321178No hitNo description
PRINTSPR004042.2E-211232IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA  60
GNVFAFGQPT VDAVVRRFDP LHADGADPAP AAVEDGGGGG DDVVVADPEE LDALRRAEEQ  120
TKAQVAAEQA RMRDVGDKVT QAMAGRALWW EADVEALGEA ELPEFVRALE RLRDSVHRHA  180
STLASTATPL PPPPEQEEEV PELDVSDYSF *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ654X7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g30810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g30810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.11e-143agamous-like MADS-box protein AGL62
TrEMBLQ654X71e-148Q654X7_ORYSJ; MADS-box protein-like
STRINGOS06T0504100-001e-148(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-16AGAMOUS-like 61