PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g45140.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 221aa    MW: 24363.5 Da    PI: 8.1152
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g45140.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1568.9e-1859112356
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       e kr rr+ +NRe+ArrsR+RK+a++ eLe  v++L++eN++L k+l e +++ 
  LOC_Os06g45140.3  59 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESSQQF 112
                       68******************************************8888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-1857121IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.51959113IPR004827Basic-leucine zipper domain
PfamPF001701.7E-1559111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-1461112No hitNo description
SuperFamilySSF579598.04E-1361112No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMKKCPSELQ LEAFIREEAD DPKPTTSANH APESDSDSDC DSLLEAERSP RLRGTKSTET  60
KRIRRMVSNR ESARRSRRRK QAQLSELESQ VEQLKGENSS LFKQLTESSQ QFNTAVTDNR  120
ILKSDVEALR VKVKMAEDMV ARAAMSCGLG QLGLAPLLSS RKMCQALDML SLPRNDACGF  180
KGLNLGRQVQ NSPVQSAASL ESLDNRISSE VTSCSADVWP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380RRSRRRKQ
27580SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.15030.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329759590.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g45140.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g45140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534740.0AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
GenBankCT8328530.0CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643805.11e-142bZIP transcription factor RISBZ5
SwissprotQ654B31e-143RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLA0A0E0Q1651e-140A0A0E0Q165_ORYRU; Uncharacterized protein
TrEMBLB8B1081e-140B8B108_ORYSI; Uncharacterized protein
STRINGORUFI06G25410.11e-141(Oryza rufipogon)
STRINGOS06T0662200-011e-141(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-31basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]