PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g45650.1
Common NameLOC4341786, MADS30, Os06g0667200, P0637D03.37
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25780.9 Da    PI: 7.5087
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g45650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.17.1e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s
  LOC_Os06g45650.1  9 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59
                      79***********************************************96 PP
2K-box622.3e-2182172998
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++++ e++  e+++L++ei++L+ ++R+  GedL+s s + eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++
  LOC_Os06g45650.1  82 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMV 172
                       4556678999***************************984689*******************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
CDDcd002658.55E-35272No hitNo description
SuperFamilySSF554551.31E-27278IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2184172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.95687178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGQGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP  60
PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS  120
TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMHQT VHEQNNFLCR MVTKILLLNV  180
ITIMILAAMI SITHARIALD DCMQLGYIVI KQENSWRFWF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-14159159MEF2 CHIMERA
6byy_B3e-14159159MEF2 CHIMERA
6byy_C3e-14159159MEF2 CHIMERA
6byy_D3e-14159159MEF2 CHIMERA
6bz1_A3e-14159159MEF2 CHIMERA
6bz1_B3e-14159159MEF2 CHIMERA
6bz1_C3e-14159159MEF2 CHIMERA
6bz1_D3e-14159159MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.280221e-66callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ655V4
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Function -- GeneRIF ? help Back to Top
  1. It was concluded that sequence deviations that accumulated led to MADS30 and the alteration of the C-terminal domain might have been a precondition for a potential neo-functionalization of OsMADS30 in O. sativa.
    [PMID: 26473514]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g45650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g45650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882177.11e-156MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-164MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLQ0DA961e-162Q0DA96_ORYSJ; Os06g0667200 protein
STRINGOS06T0667200-001e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S, et al.
    Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case.
    Plant Cell Physiol., 2003. 44(12): p. 1403-11
    [PMID:14701936]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]