PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os06g48290.1

Common Name

HOX18, Os06g0698200, OsJ_021636, P0028E05.36

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 27591 Da PI: 9.2567

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os06g48290.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.1e-18	114	168	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k LOC_Os06g48290.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 168 778899***********************************************98 PP
2	HD-ZIP_I/II	117	1.1e-37	114	201	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e eLr LOC_Os06g48290.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELR 201 69*************************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-18	94	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-19	98	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	110	170	IPR001356	Homeobox domain
SMART	SM00389	2.4E-13	112	174	IPR001356	Homeobox domain
CDD	cd00086	1.14E-12	114	171	No hit	No description
Pfam	PF00046	3.4E-15	114	168	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	145	168	IPR017970	Homeobox, conserved site
SMART	SM00340	2.0E-16	170	213	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.9E-9	170	202	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEGEDLGSWL GLGIGGGGYA YGGDDCRRSP SSPSPVQMLF SQHVKEEITR GYDHGRDEEQ 60 ASGSKIMKGE RGARLRVMRS IRNSGGDGSR SRVLSLGDDG GDGGSGGGGG GGTRKKLQLT 120 KEQSTLLEDS FRVHNILSHA QKHELARQLK LKPRQVEVWF QNRRARTKLK QTEVDCEFLK 180 RCCESLTEEN KQLKHELMEL RRLASPAAAA AGSQLYVQFP RAAAAAMVNV CPSCEKVTVM 240 GGGGGETGKS SSSYSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	170	RRARTKLKQ

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q5Z6F6

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os06g48290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os06g48290

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005445	0.0	AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643687.1	0.0	homeobox-leucine zipper protein HOX18
Swissprot	Q5Z6F6	0.0	HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBL	A0A0E0ADT9	0.0	A0A0E0ADT9_9ORYZ; Uncharacterized protein
STRING	OS06T0698200-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48
Representative plant	OGRP196	16	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-46	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	LOC_Os06g48290.1

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]