PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g01270.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1469aa    MW: 168656 Da    PI: 6.5366
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g01270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.52.2e-13319379158
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraet 58 
                       +f+n+YA++vGFs+++++++ks   kr g+itk+t++C+++gk+++ +kk++k+ +++ +t
  LOC_Os07g01270.1 319 SFFNFYAYQVGFSIVITHHYKStskKRFGQITKYTYQCYRYGKNDDGQKKKKKKTQQQRNT 379
                       59*******************99989999****************9998844444433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-12319381IPR004330FAR1 DNA binding domain
PfamPF105511.2E-36459551IPR018289MULE transposase domain
PROSITE profilePS509669.705745781IPR007527Zinc finger, SWIM-type
SMARTSM005750.001756783IPR006564Zinc finger, PMZ-type
SuperFamilySSF540011.18E-2213111463No hitNo description
Gene3DG3DSA:3.30.310.1307.6E-813551437No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1469 aa     Download sequence    Send to blast
MKSYADPVKI SIRQNKESGE TNKEKLQLGM KFTEPVKVGS MEKKGRLAYA GSPNIYNLQE  60
GEGSSSKMPH LGCRKIQHVG KNFNSPELSN TIGTIASKVV NYGGQMLYDQ FTLLNSDPRQ  120
GGQESFTSLL RTPAFDNSMI LTTSRFSPEL EEQQDMTYEQ HISTTHWSYE EFDQIYNSKY  180
IRPFAENTTA RIEELYQSKN SHFTTKDNEV DMATENDDYV ELNSDDENEQ EGTSKMLQQD  240
SQINTFTAIE QVEQHVGQAE TTSETKATSA EDNDIINEED INNYLANEED SQDNTPVVID  300
KKHIPCIGKK FRTHEETRSF FNFYAYQVGF SIVITHHYKS TSKKRFGQIT KYTYQCYRYG  360
KNDDGQKKKK KKTQQQRNTQ RRHTALPYTR KDVSNVGTTI NSETRNTDMN QVMEYLRQKE  420
AKDPGYYYKL TLDENNKVKS MFWTDGRSTQ LYEQYGEFVS FDTTYKTNRY NMPFAPIVGV  480
TGHGNICIFA CAFLGDETTE TFKWVFETFL TAMGRKHPET IITDQDLAMR AAIRQVFPNS  540
KHRNCLFHIL KKYRERSGNT FSDKRRKDLY AEFNDIVHNS LTRAEFESLW LQMIAQYNLE  600
NIKYLEIMWR TRKNFIPVYS KTDFCPFIHS TALSEGTNAR FKRGVGPTHS VMTFLLEYET  660
INDIIFDTEY GKDYESRNKK PKSFWSNYMI EEQAADLYNH GIFDKFQDEL KGTLNLEVAA  720
IQQGKAYEVY AAPNLKQQEF RSRRYVVMTD LPQENFVCIC AKFSKDGVLC SHVLKVMLYL  780
KMSKIPDKYI IERWRKKERI LTVSMQLATN DENSSVLRFN VLSRRICNMA SKASKSKETY  840
EYLLGEIDNL DSNLDLIIED AAQNQASIDE SNTVENTSED QAEKETTNEQ EDIQDPDIAN  900
TKGKKISKNK RDGREDKRTA KKTLYKMWKN KSHNRKLPAD ANCKKYKENT EDYNNKISHW  960
KNNMITLYSD LDKVDEENFG LRPIKDFNDT TYFKVVPPEN RINTFRDKLE SAIGTMLPAF  1020
IKEKICSMVV SHCSANHIVD SESCEDIAIS IMLLLCEHAG SRDGGDPDEN LIFDDINPRF  1080
QPNYAIDVEN EIPCDAHNNG STNKSVASKA NETSFRHTPS HDKELGVNDD SVIVSKSAVR  1140
FSLSPNFEKD QGLLTPEVGY ANNSNSQFEH SRSASGPTVS AVAAVRNVAN KIKSRLSQLN  1200
NDDKRGALFP DLIDSCEDEA VGYAKSLSCQ KEYLNPRYVT SSSSQPGISF HCLDNSPVQV  1260
IGINNNEGTS RTHCIQNVKK RRFDDVTNSP DVEYLGHSTF PDCCKSKILF FGQSLMKGGT  1320
VLSYVINVFC RVLFNNNHPS NSKRHYFFSS IGELLLTDLS CADLSKVKRS FLGAASARKL  1380
HLSDMLFFPI EHLEHWFLFV VDIKDRMLVL LDSLYEKGDP YFEDIECLLI NNLQTFWDSY  1440
DGSSIDFTTL KKVYPCVPKQ RSWYIFCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147EKKGRLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.743570.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975983170.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g01270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g01270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051870.0AP005187.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0446F04.
GenBankAP0058690.0AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8LH070.0Q8LH07_ORYSJ; Far-red impaired response-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2727522
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-68FAR1-related sequence 5