PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g12820.1
Common NameOsJ_23623
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 230aa    MW: 26116.5 Da    PI: 10.8798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g12820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11591999
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-..EEEEEE-SS.SEE..EEEEE-S CS
                B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD..fvvFkldgr.sefelvvkvfrk 99
                       + +++ l +p   +++  +k   ++tl+l++ +g + +vk+     +++ ++t GWkeF ++ gLk g+  +vvF+   + s+ +l+v +f+k
  LOC_Os07g12820.1  5 KTASQDYLPIPVAVTKASRLK--HGRTLKLMTAHGLKIRVKV--AEARDKLYMTIGWKEFIQEAGLKMGEskSVVFR---TlSKSRLNVIIFNK 91
                      566778888999999888888..4569***************..***********************7763379999...44677779998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0035192IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265192IPR003340B3 DNA binding domain
PfamPF023622.0E-9391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-15492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13892IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMTAHGLKI RVKVAEARDK LYMTIGWKEF  60
IQEAGLKMGE SKSVVFRTLS KSRLNVIIFN KEGYSRCPIP DKAAKALINN QSSSAPSFST  120
KSTAPRHPSF TNVEGRVHKT KSHKNEHIQL RFKHHTGSTS TANTKRIVKD MCCYNKRMKL  180
SSEVKNYVRD IAQFLDYSSK FYIVTMKNIH EVRQGGKIFH LQSIYSLEK*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FWA4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g12820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g12820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057740.0AP005774.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84YL31e-134Y7282_ORYSJ; Putative B3 domain-containing protein LOC_Os07g12820
TrEMBLB9FWA41e-170B9FWA4_ORYSJ; Uncharacterized protein
STRINGORUFI07G07980.11e-164(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1825266