PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g23450.1
Common NameLOC107278618, Os07g0417400, OsJ_23969, OSJNBa0066B06.126, OSNPB_070417400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 104aa    MW: 10762.7 Da    PI: 7.7424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g23450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-051739123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H++ H
  LOC_Os07g23450.1 17 YECTFCKRGFTNAQALGGHMNIH 39
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-71543No hitNo description
PfamPF139129.6E-61641IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-51743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00971739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4891744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MDGEGAPARR APAASYYECT FCKRGFTNAQ ALGGHMNIHR KDRSAGGKSQ GGGQHHEGGG  60
SGSGGGGGQQ HGRDVHLGLT LGRNEEERDG VDLELRLGHA HYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552GGKSQGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GVI8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g23450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g23450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043361e-174AP004336.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence.
GenBankAP0051681e-174AP005168.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06.
GenBankAP0149631e-174AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646403.12e-68zinc finger protein STAMENLESS 1-like
TrEMBLA0A0E0HZH56e-67A0A0E0HZH5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q7726e-67A0A0E0Q772_ORYRU; Uncharacterized protein
TrEMBLA2YKK66e-67A2YKK6_ORYSI; Uncharacterized protein
TrEMBLI1QA496e-67I1QA49_ORYGL; Uncharacterized protein
TrEMBLQ8GVI86e-67Q8GVI8_ORYSJ; Os07g0417400 protein
STRINGORUFI07G11810.19e-68(Oryza rufipogon)
STRINGOS07T0417400-009e-68(Oryza sativa)
STRINGONIVA07G09630.19e-68(Oryza nivara)
STRINGONIVA07G09640.19e-68(Oryza nivara)
STRINGORGLA07G0099100.19e-68(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein