PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g26150.1
Common NameOs07g0443500, OSNPB_070443500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 76aa    MW: 8654.78 Da    PI: 5.6923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g26150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-11448344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W++eE +l+ +a++ +G g    W++++r mg ++t+ ++++++
  LOC_Os07g26150.1  4 EWSKEENKLFEQAIAYYGEGapdLWHKVSRAMGGTKTADEVRLHF 48
                      7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.146156IPR017930Myb domain
SMARTSM007173.5E-7154IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-11359IPR009057Homeodomain-like
PfamPF002491.7E-9448IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5451IPR009057Homeodomain-like
CDDcd001674.93E-6448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MASEWSKEEN KLFEQAIAYY GEGAPDLWHK VSRAMGGTKT ADEVRLHFEI LVDDIKLIEA  60
RRVPFPKYNT QGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-205731178RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.399671e-124leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172193061e-124
Expression AtlasA0A0P0X597-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g26150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g26150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061591e-124AP006159.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1157F01.
GenBankAP0149631e-124AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.13e-38protein RADIALIS-like 3
SwissprotQ6NNN05e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0P0X5975e-50A0A0P0X597_ORYSJ; Os07g0443500 protein
STRINGOS07T0443500-008e-51(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-21RAD-like 6