PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g27670.1
Common NameP0038F09.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 261aa    MW: 28436.6 Da    PI: 4.5407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g27670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.64.1e-2686143258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       dD y WrKYGqK++ g++f+rsYYrC++  gC+++k+v++s++dp+ +eitY g H++
  LOC_Os07g27670.1  86 DDSYPWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSDDDPSRLEITYIGLHTC 143
                       8**************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.680141IPR003657WRKY domain
SuperFamilySSF1182901.1E-2380144IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-2484143IPR003657WRKY domain
SMARTSM007745.3E-3385145IPR003657WRKY domain
PfamPF031063.8E-2486143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTYLEFLQKN QWGQEASVGA DGVQVDDVCA GSLGGHATAG VWPGRWREIG GRACAWTAAE  60
GLENGGQESR ADGSSRRIIL ELGDRDDSYP WRKYGQKDIL GARFARSYYR CAQMLGCTAR  120
KQVQQSDDDP SRLEITYIGL HTCGGDRPSS PAPTNPADGP RCDAATSSHR LLPSALQQKL  180
EEHVPAASDD MMMACTPSWL FIPSPACSQS ELLSEGEVPE LRVVRQEPYD PVELVEEHKK  240
PSDADEDSLA LHNSVVPDFM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-16841541580Disease resistance protein RRS1
5w3x_D7e-16841541580Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.990190.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977256480.0
Expression AtlasQ6Z3B1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g27670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g27670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.10.0uncharacterized protein LOC107278742 isoform X1
TrEMBLQ6Z3B10.0Q6Z3B1_ORYSJ; Uncharacterized protein P0038F09.20
STRINGONIVA07G11310.11e-138(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-20WRKY family protein