PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g28910.1
Common NameLOC4343203, LOL1, Os07g0472200, P0675B10.121
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 148aa    MW: 15515 Da    PI: 8.8588
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g28910.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.26.3e-145074125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr+lL+YP+GA+s++Ca+C tV
  LOC_Os07g28910.1 50 CSGCRNLLMYPAGATSICCAVCGTV 74
                      ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.450.503.5E-43294IPR032710NTF2-like domain
TIGRFAMsTIGR010531.8E-134777IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-115074IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVASRAPRSE SPWLKKPMHG VSGSTAMAST PWSSMPPSSH SLGAQSQLVC SGCRNLLMYP  60
AGATSICCAV CGTVTAVPAP EQKSSCNVHE NKERLKGNTN GFRAPQRCAR RVDGACTQVA  120
REVHTEVALV IFTLLCVTLP GLLFSLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511940.0leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329715270.0
Expression AtlasQ69UP7-
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g28910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g28910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615090.0AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644598.11e-104protein LOL1 isoform X2
SwissprotQ69UP71e-105LOL1_ORYSJ; Protein LOL1
TrEMBLA0A0D3GQV59e-99A0A0D3GQV5_9ORYZ; Uncharacterized protein
STRINGOS07T0472200-011e-104(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2173144
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-18lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]