PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g31410.1
Common NameOJ1457_D07.120, P0005E02.101
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 212aa    MW: 22050.9 Da    PI: 10.0233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g31410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.85.6e-12111474127
               NAM   4 Gfr..FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkya.....tgkrknratk.. 79 
                       Gfr  F P+d++l+++ L++k+++ +   +++  +++v d + + P +L +       +++ + wyfFs r ++ a     +++ ++ra+   
  LOC_Os07g31410.1  11 GFRipFLPSDSDLLDCLLRPKIASGRvdPRFAPLVHDVaDAFALPPAQLAAahapaPGAGGAEAWYFFSVRPRARAraragSKRAASRAVGgg 103
                       6665599****************9995433334599999**********843454422236779*****999988833322222344444433 PP

               NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          +W + g +k+v        g  + + + + +a   +  +W+m ey 
  LOC_Os07g31410.1 104 gGKRWCSMGAKKAVEG-----GGYCQRFRYKERTAAGVVAPRWMMVEYG 147
                       2335******999977.....57889999998888888999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.17310177IPR003441NAC domain
PfamPF023653.4E-912147IPR003441NAC domain
SuperFamilySSF1019411.57E-2215177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAPLADPAAE GFRIPFLPSD SDLLDCLLRP KIASGRVDPR FAPLVHDVAD AFALPPAQLA  60
AAHAPAPGAG GAEAWYFFSV RPRARARARA GSKRAASRAV GGGGGKRWCS MGAKKAVEGG  120
GYCQRFRYKE RTAAGVVAPR WMMVEYGVAQ EHDGEGVAQE HGGEGVAELV LCKIFRSPEP  180
SRRSESGSPS SSSSASASPS CSGGRKRKAA E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.529071e-48flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798731e-48
Expression AtlasQ8LI00-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g31410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g31410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.14e-55PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0E0Q8K51e-146A0A0E0Q8K5_ORYRU; Uncharacterized protein
TrEMBLQ8LI001e-146Q8LI00_ORYSJ; Uncharacterized protein
STRINGORUFI07G15560.11e-147(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017