PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g38410.1
Common NameLOC9268430, Os07g0571800, OsJ_023849, YAB7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 170aa    MW: 18036.4 Da    PI: 7.9467
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g38410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY131.21.3e-40121636169
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                         e++  vqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls  ++     ++a+ +    l+    +el       +  +e++   + + + 
  LOC_Os07g38410.1  12 LRERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSASIE----LT---PQELDAGPPPGEYSDESSGDDR-EGR- 94 
                       5689999***********************************.33322222222222....22...2333333333332222222222.222. PP

             YABBY  99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                          + ++d  +p +   +++PP ++qr Psayn+f+keei+rik+  P+i+h++afs+aaknWah+P+i  +
  LOC_Os07g38410.1  95 ---DAEDDAPAPAAAAvANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 163
                       ...334444444444438**************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-4513162IPR006780YABBY protein
SuperFamilySSF470959.82E-8106159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.9E-5111162IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS  60
PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP  120
SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI QQKRGRDSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.477811e-118flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329826411e-118
Expression AtlasA2PZN8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g38410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g38410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740190.0AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647119.11e-122protein YABBY 7 isoform X2
SwissprotA2PZN81e-123YAB7_ORYSJ; Protein YABBY 7
TrEMBLI1QEG01e-121I1QEG0_ORYGL; Uncharacterized protein
STRINGORGLA07G0250200.11e-121(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Representative plantOGRP1397344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-26YABBY family protein
Publications ? help Back to Top
  1. Toriba T, et al.
    Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
    Mol. Genet. Genomics, 2007. 277(5): p. 457-68
    [PMID:17216490]