PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os07g44090.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 197aa MW: 21236.7 Da PI: 12.7587

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os07g44090.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.6e-11	14	50	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W++eEde+l + ++++G g+W+++++ g R + LOC_Os07g44090.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGGLRLR 50 788*****************************43444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.146	9	59	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-13	10	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.93E-9	10	54	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-9	14	54	IPR001005	SANT/Myb domain
CDD	cd00167	3.17E-7	17	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAKRAGGARK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGGLRLR LSCRVGRTTR 60 SRTSGTLTSR RSFASAASIR PPTSRSPRSS PPPPAPARRR CSATPSSSCP PSAPSRRRRA 120 MMAAGTARSA APRVSAATGR CRRCPGTAKR QRSSRWTAPA RARCCTAAAA APPPPVVAPR 180 RRPRRRLSRR CRAPAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	118	RRRCSATPSSSCPPSAPSRRRR
2	179	186	RRRPRRRL
3	180	185	RRPRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.14525	0.0	leaf\| panicle\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os07g44090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os07g44090

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT836172	0.0	CT836172.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040M10, full insert sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	6e-14	myb domain protein 50

Link Out ? help Back to Top
Phytozome	LOC_Os07g44090.1