PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g44200.1
Common NameOs07g0636100, OSNPB_070636100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 252aa    MW: 26659.1 Da    PI: 4.7336
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g44200.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.64.6e-3483182297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                       lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife
  LOC_Os07g44200.1  83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFE 175
                       79************************99877778***************************************8889**************** PP

            DUF573  91 lskkiWg 97 
                       +++ iW+
  LOC_Os07g44200.1 176 IARNIWR 182
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.9E-3184181IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLPAGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMATPAS  60
AGGGSGSVGG VGSSSGGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRGRLQ LGFSKSQLVE KLRRLKRKYR NCVSRLRGSG SAFSFRSPHE QAIFEIARNI  180
WRPTNKHGRD GDSDDEDATQ VTPAPVPVNT SPNDHNANYS DNGGLGTPQI AGHATSAGCF  240
RCRQELLDAS V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526220.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783740.0
Expression AtlasQ0D4B7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g44200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g44200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683560.0AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.11e-153probable transcription factor At5g28040
TrEMBLQ0D4B70.0Q0D4B7_ORYSJ; Os07g0636100 protein
STRINGOS07T0636100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-36DNA-binding storekeeper protein-related transcriptional regulator