PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g06659.1
Common NameLOC4344741, Os08g0163800, OSNPB_080163800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 197aa    MW: 21283.4 Da    PI: 4.3719
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g06659.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260903e-28161201100
            DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqql 87 
                       aCaaC++++  +C+++C+  p  pa++pk+f++++ +FG++++l + +a ++  r      + m+++vy A+ar++dP+ Ga+g ilklqqql
  LOC_Os08g06659.1  16 ACAACAHHGAsSCPPNCAPPPP-PADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRILKLQQQL 107
                       7********989**********.*************************976555666666899****************************** PP

            DUF260  88 eqlkaelallkee 100
                       ++lkae a+++++
  LOC_Os08g06659.1 108 DRLKAERARQHHP 120
                       ********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.03315121IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-1816117IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAEPPPSPTT TTTQQACAAC AHHGASSCPP NCAPPPPPAD KPKRFWYARL MFGMERILGF  60
SEAEKQGIRP NGSTVISMAA VVYLADARVE DPILGAYGRI LKLQQQLDRL KAERARQHHP  120
ATSSPAPADD VALQPEPFHQ PPAQPSTPPA LAIPDEEEEE DNDDDEDEDE EEGQEDGEGH  180
APADDDVPCA KRRKHN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.316250.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154749420.0
Expression AtlasQ0J7T3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g06659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g06659
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056050.0AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01.
GenBankAP0058470.0AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649522.11e-141LOB domain-containing protein 1
TrEMBLQ0J7T31e-140Q0J7T3_ORYSJ; Os08g0163800 protein
STRINGOS08T0163800-011e-141(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-06LOB domain-containing protein 4