PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g07700.1
Common NameLOC9270670, Os08g0173700, OSJNBa0054L03.18, OSNPB_080173700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 176aa    MW: 19447.5 Da    PI: 5.5007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g07700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-173685255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  LOC_Os08g07700.1 36 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLSAISISG 85
                      588******.**********865...5*******************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-183593IPR016177DNA-binding domain
CDDcd000183.36E-203577No hitNo description
Gene3DG3DSA:3.30.730.101.3E-253693IPR001471AP2/ERF domain
PROSITE profilePS5103220.4423694IPR001471AP2/ERF domain
SMARTSM003809.6E-2636100IPR001471AP2/ERF domain
PfamPF008473.0E-93783IPR001471AP2/ERF domain
PRINTSPR003677.4E-93748IPR001471AP2/ERF domain
PRINTSPR003677.4E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MADAAEQHHR QEETAAATTT PQQMMMRRRR ARASSEYLGV RRRPWGRYAA EIRNPYTKER  60
HWLGTFDTAE EAAVAYDLSA ISISGAAAAR TNFLYPDMHH HHPSPPQHAL SPAVPPPPPP  120
PPPSPLYDDD YLSPAAAEEE VEAGDDESLT IATILQSFQY QQSVPPASSG SMFYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1635931371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160111270.0
Expression AtlasQ6Z4V0-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g07700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g07700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417620.0AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051640.0AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649703.11e-124ethylene-responsive transcription factor LEP
SwissprotQ3E7031e-29ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A0E0I7Q61e-123A0A0E0I7Q6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QEY91e-123A0A0E0QEY9_ORYRU; Uncharacterized protein
TrEMBLQ6Z4V01e-123Q6Z4V0_ORYSJ; Os08g0173700 protein
STRINGORUFI08G04980.11e-124(Oryza rufipogon)
STRINGOS08T0173700-011e-124(Oryza sativa)
STRINGONIVA08G04340.11e-124(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-25ERF family protein