PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g14880.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 194aa    MW: 21360.7 Da    PI: 9.2041
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g14880.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.93.4e-1324932390
              FAR1 23 krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                       +++ i+++tf+Cs +g+r  +k++       + +++et+++C+a++k+++  dg + v++++ eH+H+la
  LOC_Os08g14880.3 24 GNTKIIKNKTFCCSYQGTRGIDKRAeaaGYGDSFSKPETQCKCQACMKISLI-DGLYSVYHFVPEHSHNLA 93
                      5678899************9999984444455669*****************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-82493IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSIMLMLVK KVSTLEEAAI DHVGNTKIIK NKTFCCSYQG TRGIDKRAEA AGYGDSFSKP  60
ETQCKCQACM KISLIDGLYS VYHFVPEHSH NLATKSQAHQ LRSQRKINEA QVASVEVAKS  120
VGISTKEAID LMAKQACGFE NLGFTSVDMK NKLYSKRSLQ TKQGDAGGVL EYMEKKASED  180
VSFSILFKLT RMI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.895880.0callus| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g14880.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g14880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050640.0AP005064.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880433.12e-71protein FAR1-RELATED SEQUENCE 5-like
TrEMBLC7J2F71e-99C7J2F7_ORYSJ; Os05g0475600 protein
STRINGORGLA06G0284700.15e-85(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5