PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os08g17100.1

Common Name

OSJNBa0053M06.27, OSJNBa0091D16.46

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 90aa MW: 9830.45 Da PI: 4.1264

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os08g17100.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.2	1e-08	42	79	1	38
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 rW +q +l+L+++r em++ l+++ l+++ Wee+s+ + LOC_Os08g17100.1 42 RWLRQDTLELLTIRPEMDTVLQEATLNGAIWEEISRIC 79 8**********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MPLTLLCLAF SPFAWPPSLP PPPQTPDAIA GCKNKAEAGA GRWLRQDTLE LLTIRPEMDT 60 VLQEATLNGA IWEEISRICD VFFVGDFVM*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q6YWY9

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os08g17100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os08g17100

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005163	1e-64	AP005163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06.
GenBank	AP005731	1e-64	AP005731.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16.
GenBank	AP014964	1e-64	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q6YWY9	3e-58	Q6YWY9_ORYSJ; Uncharacterized protein
STRING	ORGLA08G0073700.1	2e-46	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-10	Trihelix family protein

Link Out ? help Back to Top
Phytozome	LOC_Os08g17100.1