PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g20486.1
Common NameOSJNBa0063H21.132, P0045D08.113
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1133aa    MW: 130614 Da    PI: 6.3242
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g20486.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.25.9e-28389510291
              FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk...........................tekerrtraetrtgCka 64 
                       f+n+YA+ +GFs+++++++ks   krngeitk+t++C+ +gk+e+e+k+                           te+er+t++ ++tgCk+
  LOC_Os08g20486.1 389 FFNFYAYLAGFSTVITHHYKStskKRNGEITKYTYRCNLQGKNEPEDKNaeqeeeeqeeeeeeeeeveeeeqieeaTEQERQTNVLKKTGCKC 481
                       9*******************99999******************************************************************** PP

              FAR1  65 klkvkkek..dgkwevtkleleHnHelap 91 
                       +++v+k+    ++w++++l+l+HnH+l+p
  LOC_Os08g20486.1 482 MMMVEKMFalGDVWQIATLDLKHNHALCP 510
                       ********999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-26389510IPR004330FAR1 DNA binding domain
PfamPF105513.5E-36630724IPR018289MULE transposase domain
PROSITE profilePS509669.384917953IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-6928955IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MANLLGTASS ASTVLIASLL GHVGLQSTAS SASTVQPTSK HQRASSWDSG VGFGESPNND  60
HVVPMNKDQL TPQGNKLRNH VTLPNHIDRT EKIAKMENEK GEAKKKKKIC SKSESQLQRK  120
FKEGKNVFGE STQLSNMLGT GAEQVIKEKE LIGKNVFGES TQLSNMQDKK AEQVIKEKEL  180
IGTKKFGESS QLSNMQDRAA EQIIKEKELI GLFTPRVTYS PQALHDELTM LNSQTTQEGQ  240
QNFTRLFQTP TAYHISEWTT IEDLYELKNT HFKSQGKSSS FTNGDEQPAI YTNNEQEISL  300
CIQDQHMDKE NGTAQETVEE IQIQQTEQHE TMPESNETSN SEPNSREELN EEDIDNFLRN  360
DEDGNTQIDK KHIPELGMKF KTDKEAHGFF NFYAYLAGFS TVITHHYKST SKKRNGEITK  420
YTYRCNLQGK NEPEDKNAEQ EEEEQEEEEE EEEEVEEEEQ IEEATEQERQ TNVLKKTGCK  480
CMMMVEKMFA LGDVWQIATL DLKHNHALCP RREAKFLKSH KNMTIKEKRL IRTLKECNIP  540
TRSMIVILSF LRGGLPALPY TKKDVSNVGT AINSETRNND MKQVLAYLRK KEIEDPGISY  600
KFKLDENNKV TSMFWTDGRS TQLYEEYGDC ISFDTTYRTN RYNMPFAPFV GVIGHGTTCL  660
FGCAFLGDET AETFKWVFET FATAMGGKHP KTIITDQDNA MRSAIAQVFQ NTKHRNCLFH  720
IKKNCREKTG SMFSQKSNKN LYDEYDDILS NCLTEAEFES LWPQMIEKFN LQNVNYLKIM  780
WKNRAQFVPV YFKYDFCPFI QSTTLSEGTN SRFKRGVGPQ HSVMSFMKEY ENINDTIFDT  840
LYSKDFQSRT KKPKTLWFNY LIEEQASELY NLEIFKKFQL ELKETLSLQV SVLQQGKVYE  900
VFVSPNSIQK EYRPRKHIVI VDLPNENYSC ICGKFSKDGM LCSHVLKVML DLNVRKIPEK  960
YIIERWRKKE RKETKKHIMQ KENGDNSVLM FNVLSRKGAD IASKASKRKR TYDYLVDELD  1020
KLEKNIDLMI QQEDQTQFSQ HQDSGIEIAN AEQQEQEKDV QEEHIEDPDT ANTKGRKPKR  1080
YRRIVEKIIE SSKKKIEEQE DAEENQNKAR PKRNNNEEKQ TANSATKGNA EN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YVN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g20486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g20486
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044580.0AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0058190.0AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603940.0AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881725.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ6YVN10.0Q6YVN1_ORYSJ; Putative far-red impaired response protein
STRINGOB09G10870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-75FAR1-related sequence 5