PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g20580.1
Common NameOSJNBa0070J19.6, OSJNBa0096K16.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 225aa    MW: 23746 Da    PI: 10.5213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g20580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05166188123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ Cg+sFs+   L  H  +H
  LOC_Os08g20580.1 166 FKCSVCGRSFSSYQALGGHKTSH 188
                       89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-5165192No hitNo description
PROSITE profilePS5015711.78166193IPR007087Zinc finger, C2H2
PfamPF139123.2E-12166189IPR007087Zinc finger, C2H2
SMARTSM003550.0081166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAMAFLGQSR LYDGISWNSH LSMAFLVPPV SVATSAPSLS LPPPLPSSSL SLSLFSASRP  60
VAGAKAARVR RRRQVANGET EALHAAVLKE EEQQHEVEEA AVVTSSSATS GEEGGHLPQG  120
WAKRKRSRRQ RSEEENLALC LLMLALGGHH RVQAPPPLSA PVGAEFKCSV CGRSFSSYQA  180
LGGHKTSHRF KLPTPPASPV LAPASSEVQS PLAFSPRNSA AARI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.79121e-152callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6UU08
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g20580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g20580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044580.0AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603930.0AY360393.2 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence.
GenBankAY3603940.0AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.11e-119zinc finger protein 1, partial
SwissprotQ424302e-36ZFP1_WHEAT; Zinc finger protein 1
TrEMBLQ6UU081e-157Q6UU08_ORYSJ; Putative zinc finger transcription factor
STRINGORGLA08G0084900.13e-96(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.19e-10zinc-finger protein 1
Publications ? help Back to Top
  1. Nagaki K, et al.
    Sequencing of a rice centromere uncovers active genes.
    Nat. Genet., 2004. 36(2): p. 138-45
    [PMID:14716315]