PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g33530.1
Common NameOJ1111_B08.29
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 264aa    MW: 27557.1 Da    PI: 5.652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g33530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.2e-34842043124
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaks 93 
                        ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai  lt  +s +a ++            ++++++a+++
  LOC_Os08g33530.1  84 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAApaF---AAAPPPADQHSSAMAA 173
                       689**********************************************************9955555233221...1111112222233444 PP

               TCP  94 aakskksqksaasalnlakesrakararare 124
                       aa s  ++k +as ++  + s+a+ar r ++
  LOC_Os08g33530.1 174 AAASAAKEKGEASSSSTTNASSARARNRDHD 204
                       4455555555555566666777777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-3285199IPR005333Transcription factor, TCP
PROSITE profilePS5136933.08785143IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAAAAAVEGG  60
GGGGGGGAGG SPAAAAAATR RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA RDFFALQDKL  120
GFDKASRTVE WLLTQSKHAI NRLTLPDSAD AAAAPAFAAA PPPADQHSSA MAAAAASAAK  180
EKGEASSSST TNASSARARN RDHDGSSPVA PMDERGRRGV ELDWTAAAAA STEQPMDGLE  240
YYFQYYNHLE EIMSCDPTTT TDE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZKS4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g33530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g33530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038680.0AP003868.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1111_B08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.10.0transcription factor TB1
TrEMBLA0A0E0QJD50.0A0A0E0QJD5_ORYRU; Uncharacterized protein
TrEMBLA0A0P0XGC20.0A0A0P0XGC2_ORYSJ; Os08g0432300 protein
TrEMBLQ6ZKS40.0Q6ZKS4_ORYSJ; Putative teosinte branched1 protein
STRINGORUFI08G17540.10.0(Oryza rufipogon)
STRINGOS08T0432300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-24TCP family protein