PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g35240.1
Common NameLOC107275353, Os08g0454000, OSNPB_080454000, P0048G02.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 244aa    MW: 25966.6 Da    PI: 4.5395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g35240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-172675255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  LOC_Os08g35240.1 26 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 75
                      7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-182686IPR016177DNA-binding domain
SMARTSM003804.5E-312691IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-262687IPR001471AP2/ERF domain
CDDcd000184.24E-172687No hitNo description
PfamPF008473.0E-102675IPR001471AP2/ERF domain
PROSITE profilePS5103221.972685IPR001471AP2/ERF domain
PRINTSPR003671.6E-82738IPR001471AP2/ERF domain
PRINTSPR003671.6E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDHIGISGGG EGGVVSPAQP SSPERRYKGV RLRKWGRWVS EIRMPNSRER IWLGSYESAE  60
KAARAFDAAA VCLRGSRGAG SLNFPESPPP DVRRRFPGAA LTVEQIQAEA ARHANRPFPA  120
NTAAAGGSSS SYSISQRQEA AAPARSTSND DTAMSSVPST DGGAADYDGG DDVIDWSFMD  180
TLPAMSSSAA STNADLVPAM DDFMYGFLHT MPPSPCEDGG EDVMIDGNCN MDQTFFSVDL  240
WRF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZAG1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g35240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g35240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046620.0AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649307.11e-178ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0QJU51e-177A0A0E0QJU5_ORYRU; Uncharacterized protein
TrEMBLQ6ZAG11e-177Q6ZAG1_ORYSJ; AP2 domain transcription factor-like
STRINGORUFI08G18850.11e-178(Oryza rufipogon)
STRINGOS08T0454000-001e-178(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP1454744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-25ERF family protein