PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g36390.1
Common NameLOC4345790, Os08g0467100, OSNPB_080467100, P0104B02.35, P0470B03.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 534aa    MW: 56426.3 Da    PI: 9.5151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g36390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-066587123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  LOC_Os08g36390.1 65 YVCEICNQGFQRDQNLQMHRRRH 87
                      9*********************9 PP
2zf-C2H211.70.00081144165223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C+ C+k +  +s++k H++t+
  LOC_Os08g36390.1 144 ACSRCSKAYAVHSDYKAHLKTC 165
                       6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-56487No hitNo description
Gene3DG3DSA:3.30.160.602.2E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976587IPR007087Zinc finger, C2H2
SMARTSM003550.00526587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-4134164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.28E-5138163No hitNo description
SMARTSM00355130143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR  180
VESFIEHQDA CNAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQLFAV PASLSRTASS  240
ASPSSDLVVS PVAWPATGGG GPAMVSPRAA APAPAGGSIA AFHHRFTDPA LSPPTPCGGR  300
RGGCHTTHSL ELQLMPPRTT TTCAGGSLGG TPVATAVGYY ASSSPHSPAA ALPSRQPVAD  360
AMRLQLSIGF GGARDDGNNN SSSSSGEVSA SATRLKEAAH EQLRLAMAEK AAADEARAQA  420
KRQAELADQE LATARRMRYQ AQVELSRAHV LRDHAIRQVD ATQLQITCYS CSHKFRARAA  480
AMISSDVASY VSSVVTEGGD AEVDNDGNLH RRRLNADDGM PRGHSRTMAM DLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17139203367Zinc finger protein JACKDAW
5b3h_F1e-17139203367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKKRR
23540KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.500050.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379892180.0
Expression AtlasQ6YSA1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g36390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g36390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649378.10.0protein SHOOT GRAVITROPISM 5
TrEMBLQ6YSA10.0Q6YSA1_ORYSJ; Os08g0467100 protein
STRINGOS08T0467100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.16e-97indeterminate(ID)-domain 14